Data Platform
Rapid Integration and Visualization for Enhanced Research (RIVER) - A scalable platform that unifies data management, high-performance computing (HPC), and tool execution.
Bioinformatics research often requires collecting and curating data, executing computational tools, and managing results across distributed resources with high reproducibility. In addition, challenges related to efficiency, accessibility, and security must be addressed. RIVER integrates three key components: data storage, tool version control, and computing resources. Acting as a controller, RIVER provides a role-based access control system, enabling users to create and manage credentials, projects, and tools, while analysis jobs are launched and monitored via a user-friendly web interface.
Note: The Data Platform is currently under trial. It is not free. Contact us to get 2 free genomics assembly sample runs on the platform.
Pricing
Platform Subscription
1,000,000 VND
/month for 10 users
Fixed price until end of July 2026
- ✓ Role-based access control
- ✓ Project & credential management
- ✓ Web interface & monitoring
Storage (S3)
1,000 VND
/GB per month
- ✓ Secure scalable object storage
- ✓ Data organized by project
- ✓ RBAC for data access
HPC Compute
20,000 VND
/hour (max 16 CPUs / 32 GB RAM)
Ratio 1:2 — 1,250 VND/hour per 1 CPU + 2 GB RAM
- ✓ nf-core pipelines: Free
- ✓ OmicsLab pipelines: Adjusted
- ✓ Metagenomics assembly: 100,000 VND/sample
- ✓ Slurm HPC cluster access
- ✓ Interactive web apps (RStudio, Jupyter, VS Code)
The platform is currently under trial. Contact us to get 2 free genomics assembly sample runs.
Fully local deployment of the entire platform and HPC is available. Contact us for more details.
Cost Estimate — 100 Bacterial Genome Assemblies / Month
| Item | Unit Price | Qty | Subtotal |
|---|---|---|---|
| Metagenomics assembly | 100,000 VND/sample | 100 | 10,000,000 VND |
| HPC compute (16 CPUs / 32 GB) | 20,000 VND/hour | ~200 hours | ~4,000,000 VND |
| Platform subscription | 1,000,000 VND/month | 1 | 1,000,000 VND |
| Storage (S3) | 1,000 VND/GB | ~50 GB | ~50,000 VND |
| Estimated Total / Month | ~15,050,000 VND | ||
* Estimates based on typical bacterial genome assembly workload. Actual costs may vary. Contact us for a precise quote.
Cost Estimate — 100 16S rRNA Samples / Month
| Item | Unit Price | Qty | Subtotal |
|---|---|---|---|
| 16S rRNA analysis | 100,000 VND/sample | 100 | 10,000,000 VND |
| HPC compute (16 CPUs / 32 GB) | 20,000 VND/hour | ~50 hours | ~1,000,000 VND |
| Platform subscription | 1,000,000 VND/month | 1 | 1,000,000 VND |
| Storage (S3) | 1,000 VND/GB | ~10 GB | ~10,000 VND |
| Estimated Total / Month | ~12,010,000 VND | ||
* Estimates based on typical 16S rRNA analysis workload. Actual costs may vary. Contact us for a precise quote.
Key Features
Data Storage
Secure, scalable storage for datasets. Organize data by project, type, and analysis. Raw or processed data can be stored and shared using role-based access control (RBAC) where the data source can be registered with the S3 credential service,
HPC Integration
Connect to Slurm HPC cluster for compute-intensive analysis. Jobs are launched and monitored via a user-friendly web interface.
Tool Integration
Easy integration and execution of community-developed workflows (such as nf-core) as well as custom pipelines. Supports multi-omics data analysis.
Project Management
Create and manage projects with credentials. Support independent and reproducible analyses across groups with organization-specific computing resources.
Getting Started
- Create a project and upload your raw data files
- Configure credentials and access permissions
- Select data for pipeline execution
- Run pipeline on HPC and monitor progress
- Visualize pipeline report and download processed results
Use Cases
Non-Interactive Analysis
RIVER allows effortless integration and execution of community-developed workflows as well as custom pipelines with easy migration from existing tools. It supports all nf-core pipelines (https://nf-co.re/pipelines/) or required to add a minor configuration for non nf-core nextflow, snakemake and bash script pipelines
Interactive Web Apps
RIVER provides a secure way to publish interactive web applications from HPC environments to the public network, with authentication and centralized system control. It includes a ready-to-use Studio stack—RStudio Server, JupyterLab, and VS Code Server—and also supports access to other web-based applications such as custom dashboards.
Collaborative Research
Support independent and reproducible analyses across computing resources (HPC, Cloud), with data stored in the cloud and organization-specific computing resources.
Let's work together on your bioinformatics needs.
Our Location
Ho Chi Minh City, Vietnam
Email Us
contact@omicslab.io